Disc I [Images And Words]
01. Pull Me Under
02. Another Day
03. Take The Time
04. Surrounded
05. Metropolis - Part I "The Miracle And The Sleeper"
06. Under A Glass Moon
07. Wait For Sleep
08. Learning To Live

Disc II [Awake]
01. 6:00
02. Caught In A Web
03. Innocence Faded
04. A Mind Beside Itself: I. Erotomania
05. A Mind Beside Itself: II. Voices
06. A Mind Beside Itself: III. The Silent Man
07. The Mirror
08. Lie
09. Lifting Shadows Off A Dream
10. Scarred
11. Space-Dye Vest
12. Eve [Japanese bonus]

Disc III [Falling Into Infinity]
01. New Millennium
02. You Not Me
03. Peruvian Skies
04. Hollow Years
05. Burning My Soul
06. Hell's Kitchen
07. Lines In The Sand
08. Take Away My Pain
09. Just Let Me Breathe
10. Anna Lee
11. Trial Of Tears
    1 - It's Raining
    2 - Deep In Heaven
    3 - The Wasteland

Disc IV [Metropolis Pt. 2: Scenes From A Memory]
Act I
01. Scene One: Regression
02. Scene Two: I. Overture 1928
03. Scene Two: II. Strange Deja Vu
04. Scene Three: I. Through My Words
05. Scene Three: II. Fatal Tragedy
06. Scene Four: Beyond This Life
07. Scene Five: Through Her Eyes

Act II
08. Scene Six: Home
09. Scene Seven: I. The Dance Of Eternity
10. Scene Seven: II. One Last Time
11. Scene Eight: The Spirit Carries On
12. Scene Nine: Finally Free

Disc V [Six Degrees Of Inner Turbulence (Disc 1)]
01. The Glass Prison
    1 - Reflection
    2 - Restoration
    3 - Revelation
02. Blind Faith
03. Misunderstood
04. The Great Debate
05. Disappear

Disc VI [Six Degrees Of Inner Turbulence (Disc 2)]
01. Six Degrees Of Inner Turbulence
    1 - Overture
    2 - About To Crash
    3 - War Inside My Head
    4 - The Test That Stumped Them All
    5 - Goodnight Kiss
    6 - Solitary Shell
    7 - About To Crash [reprise]
    8 - Losing Time/Grand Finale

Disc VII [Train Of Thought]
01. As I Am
02. This Dying Soul
    1 - IV. Reflections of Reality (Revisited)
    2 - V. Release
03. Endless Sacrifice
04. Honor Thy Father
05. Vacant
06. Stream Of Consciousness
07. In The Name Of God

Disc VIII [Octavarium]
01. The Root Of All Evil
    1 - VI. Ready
    2 - VII. Remove
02. The Answer Lies Within
03. These Walls
04. I Walk Beside You
05. Panic Attack
06. Never Enough
07. Sacrificed Sons
08. Octavarium
    1 - Someone Like Him
    2 - Medicate (Awakening)
    3 - Full Circle
    4 - Intervals
    5 - Razor's Edge

Disc IX [Systematic Chaos]
01. In The Presence Of Enemies - Part I
    1 - Prelude
    2 - Resurrection
02. Forsaken
03. Constant Motion
04. The Dark Eternal Night
05. Repentance
    1 - VIII. Regret
    2 - IX. Restitution
06. Prophets Of War
07. The Ministry Of Lost Souls
08. In The Presence Of Enemies - Part II
    1 - Heretic
    2 - The Slaughter Of The Damned
    3 - The Reckoning
    4 - Salvation

Disc X [Black Clouds & Silver Linings]
01. A Nightmare To Remember
02. A Rite Of Passage
03. Wither
04. The Shattered Fortress
    1 - X. Restraint
    2 - XI. Receive
    3 - XII. Responsible
05. The Best Of Times
06. The Count Of Tuscany

Disc XI [A Dramatic Turn Of Events]
01. On The Backs Of Angels
02. Build Me Up, Break Me Down
03. Lost Not Forgotten
04. This Is The Life
05. Bridges In The Sky
06. Outcry
07. Far From Heaven
08. Breaking All Illusions
09. Beneath The Surface